Detailed information of SNP:
|
SNP ID:
sf0724068890(Gbrowse)
Chromosome: chr07 Position: 24068890 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 58.42% | 41.58% |
| All Indica | 799 | 92.62% | 7.38% |
| All Japonica | 495 | 6.26% | 93.74% |
| Aus | 66 | 48.48% | 51.52% |
| Indica I | 375 | 92.00% | 8.00% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 4.18% | 95.82% |
| Tropical Japonica | 92 | 13.04% | 86.96% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0724068890 | T->C | INTERGENIC | None |