Detailed information of SNP:
|
SNP ID:
sf0724097049(Gbrowse)
Chromosome: chr07 Position: 24097049 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 87.54% | 12.46% |
| All Indica | 797 | 98.49% | 1.51% |
| All Japonica | 493 | 70.59% | 29.41% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 212 | 95.75% | 4.25% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 91.04% | 8.96% |
| Tropical Japonica | 92 | 23.91% | 76.09% |
| Japonica Intermediate | 66 | 31.82% | 68.18% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0724097049 | G->A | INTERGENIC | None |