Detailed information of SNP:
|
SNP ID:
sf0724166011(Gbrowse)
Chromosome: chr07 Position: 24166011 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 81.86% | 18.14% |
| All Indica | 798 | 95.61% | 4.39% |
| All Japonica | 497 | 60.76% | 39.24% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 95.45% | 4.55% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 80.00% | 20.00% |
| Tropical Japonica | 94 | 18.09% | 81.91% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0724166011 | C->T | INTERGENIC | None |