Detailed information of SNP:



SNP ID: sf0724209351(Gbrowse)

Chromosome: chr07

Position: 24209351
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1396 81.66% 18.34%
All Indica796 96.23% 3.77%
All Japonica478 63.18% 36.82%
Aus67 56.72% 43.28%
Indica I372 96.24% 3.76%
Indica II213 95.31% 4.69%
Indica Intermediate211 97.16% 2.84%
Temperate Japonica323 82.66% 17.34%
Tropical Japonica88 21.59% 78.41%
Japonica Intermediate67 23.88% 76.12%
Group VI/Aromatic13 15.38% 84.62%
Intermediate42 76.19% 23.81%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0724209351 C->T INTERGENIC None