Detailed information of SNP:
|
SNP ID:
sf0724209351(Gbrowse)
Chromosome: chr07 Position: 24209351 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1396 | 81.66% | 18.34% |
| All Indica | 796 | 96.23% | 3.77% |
| All Japonica | 478 | 63.18% | 36.82% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 372 | 96.24% | 3.76% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 323 | 82.66% | 17.34% |
| Tropical Japonica | 88 | 21.59% | 78.41% |
| Japonica Intermediate | 67 | 23.88% | 76.12% |
| Group VI/Aromatic | 13 | 15.38% | 84.62% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0724209351 | C->T | INTERGENIC | None |