Detailed information of SNP:
|
SNP ID:
sf0724226393(Gbrowse)
Chromosome: chr07 Position: 24226393 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1394 | 57.89% | 42.11% |
| All Indica | 781 | 97.44% | 2.56% |
| All Japonica | 492 | 1.22% | 98.78% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 194 | 98.45% | 1.55% |
| Temperate Japonica | 334 | 0.00% | 100.00% |
| Tropical Japonica | 91 | 1.10% | 98.90% |
| Japonica Intermediate | 67 | 7.46% | 92.54% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0724226393 | G->T | INTERGENIC | None |