Detailed information of SNP:
|
SNP ID:
sf0724293071(Gbrowse)
Chromosome: chr07 Position: 24293071 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 85.34% | 14.66% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 497 | 58.55% | 41.45% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 40.60% | 59.40% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0724293071 | T->C | LOC_Os07g40550(LOC_Os07g40550.1) | Synonymous |
| sf0724293071 | T->C | LOC_Os07g40550(LOC_Os07g40550.3) | Synonymous |
| sf0724293071 | T->C | LOC_Os07g40550(LOC_Os07g40550.2) | Synonymous |