Detailed information of SNP:
|
SNP ID:
sf0724339838(Gbrowse)
Chromosome: chr07 Position: 24339838 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 54.62% | 45.38% |
| All Indica | 797 | 50.82% | 49.18% |
| All Japonica | 497 | 58.15% | 41.85% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 374 | 82.62% | 17.38% |
| Indica II | 213 | 14.08% | 85.92% |
| Indica Intermediate | 210 | 31.43% | 68.57% |
| Temperate Japonica | 335 | 40.90% | 59.10% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0724339838 | C->T | INTERGENIC | None |