Detailed information of SNP:
|
SNP ID:
sf0724352645(Gbrowse)
Chromosome: chr07 Position: 24352645 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1381 | 94.79% | 5.21% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 459 | 96.08% | 3.92% |
| Aus | 67 | 28.36% | 71.64% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 332 | 99.40% | 0.60% |
| Tropical Japonica | 70 | 94.29% | 5.71% |
| Japonica Intermediate | 57 | 78.95% | 21.05% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0724352645 | C->T | INTERGENIC | None |