Detailed information of SNP:
|
SNP ID:
sf0724359765(Gbrowse)
Chromosome: chr07 Position: 24359765 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 58.08% | 41.92% |
| All Indica | 797 | 50.56% | 49.44% |
| All Japonica | 497 | 70.62% | 29.38% |
| Aus | 67 | 65.67% | 34.33% |
| Indica I | 374 | 17.65% | 82.35% |
| Indica II | 213 | 90.14% | 9.86% |
| Indica Intermediate | 210 | 69.05% | 30.95% |
| Temperate Japonica | 335 | 63.58% | 36.42% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 66.18% | 33.82% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0724359765 | C->T | INTERGENIC | None |