Detailed information of SNP:
|
SNP ID:
sf0724375043(Gbrowse)
Chromosome: chr07 Position: 24375043 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 60.51% | 39.49% |
| All Indica | 798 | 51.13% | 48.87% |
| All Japonica | 497 | 74.85% | 25.15% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 374 | 18.18% | 81.82% |
| Indica II | 213 | 90.14% | 9.86% |
| Indica Intermediate | 211 | 70.14% | 29.86% |
| Temperate Japonica | 335 | 69.85% | 30.15% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 66.18% | 33.82% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0724375043 | A->G | INTERGENIC | None |