Detailed information of SNP:
|
SNP ID:
sf0724376259(Gbrowse)
Chromosome: chr07 Position: 24376259 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1294 | 86.86% | 13.14% |
| All Indica | 739 | 84.03% | 15.97% |
| All Japonica | 469 | 91.04% | 8.96% |
| Aus | 34 | 88.24% | 11.76% |
| Indica I | 364 | 95.60% | 4.40% |
| Indica II | 193 | 67.36% | 32.64% |
| Indica Intermediate | 182 | 78.57% | 21.43% |
| Temperate Japonica | 332 | 98.19% | 1.81% |
| Tropical Japonica | 76 | 65.79% | 34.21% |
| Japonica Intermediate | 61 | 83.61% | 16.39% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 84.21% | 15.79% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0724376259 | G->A | LOC_Os07g40680(LOC_Os07g40680.1) | Non-Synonymous SNP |