Detailed information of SNP:
|
SNP ID:
sf0724378247(Gbrowse)
Chromosome: chr07 Position: 24378247 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 57.90% | 42.10% |
| All Indica | 798 | 52.13% | 47.87% |
| All Japonica | 497 | 70.62% | 29.38% |
| Aus | 67 | 34.33% | 65.67% |
| Indica I | 375 | 83.47% | 16.53% |
| Indica II | 213 | 12.21% | 87.79% |
| Indica Intermediate | 210 | 36.67% | 63.33% |
| Temperate Japonica | 335 | 95.52% | 4.48% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 42.65% | 57.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0724378247 | A->G | INTERGENIC | None |