Detailed information of SNP:
|
SNP ID:
sf0724396006(Gbrowse)
Chromosome: chr07 Position: 24396006 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 72.14% | 27.86% |
| All Indica | 798 | 97.37% | 2.63% |
| All Japonica | 497 | 28.37% | 71.63% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 335 | 34.93% | 65.07% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 33.82% | 66.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0724396006 | G->A | LOC_Os07g40710(LOC_Os07g40710.1) | Synonymous |
| sf0724396006 | G->A | LOC_Os07g40710(LOC_Os07g40710.2) | Synonymous |