Detailed information of SNP:
|
SNP ID:
sf0724416116(Gbrowse)
Chromosome: chr07 Position: 24416116 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 89.34% | 10.66% |
| All Indica | 799 | 99.25% | 0.75% |
| All Japonica | 494 | 73.08% | 26.92% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 333 | 65.47% | 34.53% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 74.63% | 25.37% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0724416116 | A->T | INTERGENIC | None |