Detailed information of SNP:
|
SNP ID:
sf0724424045(Gbrowse)
Chromosome: chr07 Position: 24424045 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 82.38% | 17.62% |
| All Indica | 794 | 96.98% | 3.02% |
| All Japonica | 496 | 57.26% | 42.74% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 373 | 98.39% | 1.61% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 208 | 94.71% | 5.29% |
| Temperate Japonica | 335 | 40.00% | 60.00% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 67 | 89.55% | 10.45% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0724424045 | T->C | LOC_Os07g40760(LOC_Os07g40760.1) | INTRON |