Detailed information of SNP:
|
SNP ID:
sf0724424316(Gbrowse)
Chromosome: chr07 Position: 24424316 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 71.63% | 28.37% |
| All Indica | 798 | 96.24% | 3.76% |
| All Japonica | 497 | 28.97% | 71.03% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 210 | 95.71% | 4.29% |
| Temperate Japonica | 335 | 35.82% | 64.18% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 32.35% | 67.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0724424316 | G->A | LOC_Os07g40760(LOC_Os07g40760.1) | INTRON |