Detailed information of SNP:
|
SNP ID:
sf0724426463(Gbrowse)
Chromosome: chr07 Position: 24426463 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 58.94% | 41.06% |
| All Indica | 796 | 92.84% | 7.16% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 373 | 94.91% | 5.09% |
| Indica II | 213 | 90.14% | 9.86% |
| Indica Intermediate | 210 | 91.90% | 8.10% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0724426463 | G->A | LOC_Os07g40760(LOC_Os07g40760.1) | Non-Synonymous SNP |