Detailed information of SNP:
|
SNP ID:
sf0724426670(Gbrowse)
Chromosome: chr07 Position: 24426670 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 81.48% | 18.52% |
| All Indica | 799 | 98.12% | 1.88% |
| All Japonica | 487 | 52.16% | 47.84% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 331 | 38.37% | 61.63% |
| Tropical Japonica | 93 | 93.55% | 6.45% |
| Japonica Intermediate | 63 | 63.49% | 36.51% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0724426670 | T->C | LOC_Os07g40760(LOC_Os07g40760.1) | Non-Synonymous SNP |