Detailed information of SNP:
|
SNP ID:
sf0724426874(Gbrowse)
Chromosome: chr07 Position: 24426874 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 68.79% | 31.21% |
| All Indica | 799 | 90.11% | 9.89% |
| All Japonica | 497 | 43.46% | 56.54% |
| Aus | 66 | 7.58% | 92.42% |
| Indica I | 375 | 92.80% | 7.20% |
| Indica II | 213 | 87.32% | 12.68% |
| Indica Intermediate | 211 | 88.15% | 11.85% |
| Temperate Japonica | 335 | 60.90% | 39.10% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0724426874 | T->C | LOC_Os07g40760(LOC_Os07g40760.1) | Non-Synonymous SNP |