Detailed information of SNP:
|
SNP ID:
sf0724435767(Gbrowse)
Chromosome: chr07 Position: 24435767 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 67.56% | 32.44% |
| All Indica | 799 | 97.37% | 2.63% |
| All Japonica | 497 | 28.17% | 71.83% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 36.12% | 63.88% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 26.47% | 73.53% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0724435767 | C->T | INTERGENIC | None |