Detailed information of SNP:
|
SNP ID:
sf0724439192(Gbrowse)
Chromosome: chr07 Position: 24439192 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 72.92% | 27.08% |
| All Indica | 799 | 97.12% | 2.88% |
| All Japonica | 497 | 28.97% | 71.03% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 36.12% | 63.88% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 32.35% | 67.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0724439192 | C->T | LOC_Os07g40780(LOC_Os07g40780.1) | UTR_3_PRIME |