Detailed information of SNP:
|
SNP ID:
sf0724459012(Gbrowse)
Chromosome: chr07 Position: 24459012 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 82.85% | 17.15% |
| All Indica | 799 | 98.75% | 1.25% |
| All Japonica | 496 | 69.76% | 30.24% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 334 | 95.21% | 4.79% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 38.24% | 61.76% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0724459012 | T->A | INTERGENIC | None |