Detailed information of SNP:
|
SNP ID:
sf0724464519(Gbrowse)
Chromosome: chr07 Position: 24464519 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1411 | 85.26% | 14.74% |
| All Indica | 799 | 98.75% | 1.25% |
| All Japonica | 490 | 75.92% | 24.08% |
| Aus | 66 | 10.61% | 89.39% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 332 | 96.99% | 3.01% |
| Tropical Japonica | 94 | 18.09% | 81.91% |
| Japonica Intermediate | 64 | 51.56% | 48.44% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0724464519 | A->G | INTERGENIC | None |