Detailed information of SNP:
|
SNP ID:
sf0724464967(Gbrowse)
Chromosome: chr07 Position: 24464967 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1400 | 86.14% | 13.86% |
| All Indica | 799 | 99.12% | 0.88% |
| All Japonica | 480 | 76.46% | 23.54% |
| Aus | 66 | 12.12% | 87.88% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 334 | 97.31% | 2.69% |
| Tropical Japonica | 81 | 3.70% | 96.30% |
| Japonica Intermediate | 65 | 60.00% | 40.00% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0724464967 | G->A | INTERGENIC | None |