Detailed information of SNP:
|
SNP ID:
sf0724465421(Gbrowse)
Chromosome: chr07 Position: 24465421 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1402 | 88.80% | 11.20% |
| All Indica | 799 | 97.25% | 2.75% |
| All Japonica | 488 | 74.80% | 25.20% |
| Aus | 61 | 96.72% | 3.28% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 331 | 67.67% | 32.33% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 64 | 76.56% | 23.44% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0724465421 | T->C | INTERGENIC | None |