Detailed information of SNP:
|
SNP ID:
sf0724472211(Gbrowse)
Chromosome: chr07 Position: 24472211 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1405 | 76.58% | 23.42% |
| All Indica | 789 | 97.85% | 2.15% |
| All Japonica | 497 | 43.66% | 56.34% |
| Aus | 64 | 84.38% | 15.62% |
| Indica I | 371 | 99.73% | 0.27% |
| Indica II | 209 | 93.30% | 6.70% |
| Indica Intermediate | 209 | 99.04% | 0.96% |
| Temperate Japonica | 335 | 60.00% | 40.00% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 20.59% | 79.41% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0724472211 | T->C | LOC_Os07g40860(LOC_Os07g40860.1) | Synonymous |
| sf0724472211 | T->C | LOC_Os07g40860(LOC_Os07g40860.2) | Synonymous |