Detailed information of SNP:
|
SNP ID:
sf0724472526(Gbrowse)
Chromosome: chr07 Position: 24472526 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 72.46% | 27.54% |
| All Indica | 799 | 98.12% | 1.88% |
| All Japonica | 495 | 43.03% | 56.97% |
| Aus | 66 | 7.58% | 92.42% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 333 | 60.66% | 39.34% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0724472526 | A->G | LOC_Os07g40860(LOC_Os07g40860.1) | Synonymous |
| sf0724472526 | A->G | LOC_Os07g40860(LOC_Os07g40860.2) | Synonymous |