Detailed information of SNP:
|
SNP ID:
sf0724480629(Gbrowse)
Chromosome: chr07 Position: 24480629 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 76.82% | 23.18% |
| All Indica | 799 | 98.62% | 1.38% |
| All Japonica | 492 | 52.85% | 47.15% |
| Aus | 65 | 13.85% | 86.15% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 332 | 67.77% | 32.23% |
| Tropical Japonica | 93 | 19.35% | 80.65% |
| Japonica Intermediate | 67 | 25.37% | 74.63% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0724480629 | C->T | LOC_Os07g40890(LOC_Os07g40890.1) | Synonymous |