Detailed information of SNP:



SNP ID: sf0724505403(Gbrowse)

Chromosome: chr07

Position: 24505403
Major allele: C

Minor allele: G

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of G(minor allele)
All1418 70.31% 29.69%
All Indica799 96.25% 3.75%
All Japonica496 23.79% 76.21%
Aus67 100.00% 0.00%
Indica I375 99.20% 0.80%
Indica II213 94.84% 5.16%
Indica Intermediate211 92.42% 7.58%
Temperate Japonica335 31.04% 68.96%
Tropical Japonica93 2.15% 97.85%
Japonica Intermediate68 17.65% 82.35%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 69.05% 30.95%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0724505403 G->C LOC_Os07g40940(LOC_Os07g40940.1) Synonymous