Detailed information of SNP:
|
SNP ID:
sf0724509634(Gbrowse)
Chromosome: chr07 Position: 24509634 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1215 | 72.26% | 27.74% |
| All Indica | 607 | 77.59% | 22.41% |
| All Japonica | 496 | 76.81% | 23.19% |
| Aus | 62 | 3.23% | 96.77% |
| Indica I | 249 | 81.93% | 18.07% |
| Indica II | 192 | 69.79% | 30.21% |
| Indica Intermediate | 166 | 80.12% | 19.88% |
| Temperate Japonica | 335 | 69.25% | 30.75% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 83.58% | 16.42% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 36 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0724509634 | T->C | INTERGENIC | None |