Detailed information of SNP:
|
SNP ID:
sf0724511936(Gbrowse)
Chromosome: chr07 Position: 24511936 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1373 | 62.35% | 37.65% |
| All Indica | 793 | 89.79% | 10.21% |
| All Japonica | 490 | 20.82% | 79.18% |
| Aus | 42 | 35.71% | 64.29% |
| Indica I | 371 | 92.18% | 7.82% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 209 | 86.60% | 13.40% |
| Temperate Japonica | 331 | 28.10% | 71.90% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 65 | 12.31% | 87.69% |
| Group VI/Aromatic | 10 | 60.00% | 40.00% |
| Intermediate | 38 | 55.26% | 44.74% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0724511936 | T->C | LOC_Os07g40950(LOC_Os07g40950.1) | Non-Synonymous SNP |