Detailed information of SNP:
|
SNP ID:
sf0724512492(Gbrowse)
Chromosome: chr07 Position: 24512492 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 70.54% | 29.46% |
| All Indica | 799 | 96.37% | 3.63% |
| All Japonica | 491 | 23.63% | 76.37% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 31.04% | 68.96% |
| Tropical Japonica | 91 | 1.10% | 98.90% |
| Japonica Intermediate | 65 | 16.92% | 83.08% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0724512492 | A->C | LOC_Os07g40950(LOC_Os07g40950.1) | Synonymous |