Detailed information of SNP:
|
SNP ID:
sf0724514353(Gbrowse)
Chromosome: chr07 Position: 24514353 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 68.90% | 31.10% |
| All Indica | 799 | 94.99% | 5.01% |
| All Japonica | 497 | 22.33% | 77.67% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 335 | 29.85% | 70.15% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0724514353 | C->T | LOC_Os07g40974(LOC_Os07g40974.1) | UTR_3_PRIME |
| sf0724514353 | C->T | LOC_Os07g40974(LOC_Os07g40974.2) | UTR_3_PRIME |