Detailed information of SNP:
|
SNP ID:
sf0724514879(Gbrowse)
Chromosome: chr07 Position: 24514879 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 93.23% | 6.77% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 496 | 81.85% | 18.15% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 74.55% | 25.45% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0724514879 | G->A | LOC_Os07g40974(LOC_Os07g40974.1) | Synonymous |
| sf0724514879 | G->A | LOC_Os07g40974(LOC_Os07g40974.2) | Synonymous |