Detailed information of SNP:
|
SNP ID:
sf0724514888(Gbrowse)
Chromosome: chr07 Position: 24514888 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 91.96% | 8.04% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 496 | 80.04% | 19.96% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 334 | 72.16% | 27.84% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0724514888 | G->A | LOC_Os07g40974(LOC_Os07g40974.1) | Synonymous |
| sf0724514888 | G->A | LOC_Os07g40974(LOC_Os07g40974.2) | Synonymous |