Detailed information of SNP:
|
SNP ID:
sf0724514919(Gbrowse)
Chromosome: chr07 Position: 24514919 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 92.17% | 7.83% |
| All Indica | 798 | 99.50% | 0.50% |
| All Japonica | 497 | 80.48% | 19.52% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 72.84% | 27.16% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0724514919 | G->A | LOC_Os07g40974(LOC_Os07g40974.1) | Non-Synonymous SNP |
| sf0724514919 | G->A | LOC_Os07g40974(LOC_Os07g40974.2) | Non-Synonymous SNP |