Detailed information of SNP:
|
SNP ID:
sf0724515481(Gbrowse)
Chromosome: chr07 Position: 24515481 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 91.86% | 8.14% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 490 | 79.59% | 20.41% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 329 | 71.43% | 28.57% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 92.54% | 7.46% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0724515481 | C->A | LOC_Os07g40974(LOC_Os07g40974.1) | Non-Synonymous SNP |
| sf0724515481 | C->A | LOC_Os07g40974(LOC_Os07g40974.2) | Non-Synonymous SNP |