Detailed information of SNP:
|
SNP ID:
sf0724516577(Gbrowse)
Chromosome: chr07 Position: 24516577 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 69.91% | 30.09% |
| All Indica | 799 | 95.99% | 4.01% |
| All Japonica | 497 | 23.34% | 76.66% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 30.75% | 69.25% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0724516577 | A->G | LOC_Os07g40974(LOC_Os07g40974.1) | INTRON |
| sf0724516577 | A->G | LOC_Os07g40974(LOC_Os07g40974.2) | INTRON |