Detailed information of SNP:
|
SNP ID:
sf0724517329(Gbrowse)
Chromosome: chr07 Position: 24517329 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 69.61% | 30.39% |
| All Indica | 799 | 95.74% | 4.26% |
| All Japonica | 497 | 23.14% | 76.86% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 30.75% | 69.25% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0724517329 | C->T | LOC_Os07g40986(LOC_Os07g40986.2) | Synonymous |
| sf0724517329 | C->T | LOC_Os07g40986(LOC_Os07g40986.1) | Synonymous |