Detailed information of SNP:
|
SNP ID:
sf0724521895(Gbrowse)
Chromosome: chr07 Position: 24521895 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1211 | 70.77% | 29.23% |
| All Indica | 635 | 69.61% | 30.39% |
| All Japonica | 468 | 77.99% | 22.01% |
| Aus | 59 | 32.20% | 67.80% |
| Indica I | 287 | 57.49% | 42.51% |
| Indica II | 174 | 79.89% | 20.11% |
| Indica Intermediate | 174 | 79.31% | 20.69% |
| Temperate Japonica | 312 | 69.87% | 30.13% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 63 | 90.48% | 9.52% |
| Group VI/Aromatic | 13 | 30.77% | 69.23% |
| Intermediate | 36 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0724521895 | G->A | LOC_Os07g40986(LOC_Os07g40986.2) | INTRON |
| sf0724521895 | G->A | LOC_Os07g40986(LOC_Os07g40986.1) | INTRON |