Detailed information of SNP:
|
SNP ID:
sf0724522133(Gbrowse)
Chromosome: chr07 Position: 24522133 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1403 | 70.71% | 29.29% |
| All Indica | 788 | 82.61% | 17.39% |
| All Japonica | 493 | 47.46% | 52.54% |
| Aus | 66 | 84.85% | 15.15% |
| Indica I | 371 | 82.48% | 17.52% |
| Indica II | 211 | 85.31% | 14.69% |
| Indica Intermediate | 206 | 80.10% | 19.90% |
| Temperate Japonica | 333 | 33.63% | 66.37% |
| Tropical Japonica | 93 | 93.55% | 6.45% |
| Japonica Intermediate | 67 | 52.24% | 47.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0724522133 | A->G | LOC_Os07g40986(LOC_Os07g40986.2) | INTRON |
| sf0724522133 | A->G | LOC_Os07g40986(LOC_Os07g40986.1) | INTRON |