Detailed information of SNP:
|
SNP ID:
sf0724523527(Gbrowse)
Chromosome: chr07 Position: 24523527 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1411 | 69.60% | 30.40% |
| All Indica | 795 | 95.85% | 4.15% |
| All Japonica | 495 | 22.63% | 77.37% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 99.19% | 0.81% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 333 | 30.03% | 69.97% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0724523527 | G->A | LOC_Os07g40986(LOC_Os07g40986.2) | INTRON |
| sf0724523527 | G->A | LOC_Os07g40986(LOC_Os07g40986.1) | INTRON |