Detailed information of SNP:
SNP ID:
sf0724525507(Gbrowse)
Chromosome: chr07 Position: 24525507 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1419 | 91.12% | 8.88% |
All Indica | 799 | 99.25% | 0.75% |
All Japonica | 497 | 77.87% | 22.13% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 100.00% | 0.00% |
Indica II | 213 | 98.12% | 1.88% |
Indica Intermediate | 211 | 99.05% | 0.95% |
Temperate Japonica | 335 | 69.25% | 30.75% |
Tropical Japonica | 94 | 98.94% | 1.06% |
Japonica Intermediate | 68 | 91.18% | 8.82% |
Group VI/Aromatic | 14 | 50.00% | 50.00% |
Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0724525507 | C->T | LOC_Os07g40986(LOC_Os07g40986.2) | INTRON |
sf0724525507 | C->T | LOC_Os07g40986(LOC_Os07g40986.1) | INTRON |