Detailed information of SNP:
|
SNP ID:
sf0724525934(Gbrowse)
Chromosome: chr07 Position: 24525934 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 89.99% | 10.01% |
| All Indica | 798 | 98.37% | 1.63% |
| All Japonica | 497 | 78.07% | 21.93% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 374 | 98.66% | 1.34% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 69.55% | 30.45% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0724525934 | T->C | LOC_Os07g40986(LOC_Os07g40986.2) | INTRON |
| sf0724525934 | T->C | LOC_Os07g40986(LOC_Os07g40986.1) | INTRON |