Detailed information of SNP:
|
SNP ID:
sf0724526966(Gbrowse)
Chromosome: chr07 Position: 24526966 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 69.92% | 30.08% |
| All Indica | 798 | 95.61% | 4.39% |
| All Japonica | 496 | 23.39% | 76.61% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 98.40% | 1.60% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 334 | 30.84% | 69.16% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0724526966 | A->G | LOC_Os07g40986(LOC_Os07g40986.2) | UTR_5_PRIME |
| sf0724526966 | A->G | LOC_Os07g40986(LOC_Os07g40986.1) | UTR_5_PRIME |