Detailed information of SNP:
|
SNP ID:
sf0724528290(Gbrowse)
Chromosome: chr07 Position: 24528290 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1297 | 60.91% | 39.09% |
| All Indica | 794 | 96.10% | 3.90% |
| All Japonica | 389 | 0.51% | 99.49% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 209 | 94.74% | 5.26% |
| Indica Intermediate | 210 | 91.90% | 8.10% |
| Temperate Japonica | 234 | 0.43% | 99.57% |
| Tropical Japonica | 93 | 0.00% | 100.00% |
| Japonica Intermediate | 62 | 1.61% | 98.39% |
| Group VI/Aromatic | 8 | 12.50% | 87.50% |
| Intermediate | 39 | 48.72% | 51.28% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0724528290 | G->A | INTERGENIC | None |