Detailed information of SNP:
|
SNP ID:
sf0724531095(Gbrowse)
Chromosome: chr07 Position: 24531095 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 64.71% | 35.29% |
| All Indica | 799 | 95.99% | 4.01% |
| All Japonica | 495 | 22.83% | 77.17% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 334 | 31.44% | 68.56% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 67 | 10.45% | 89.55% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0724531095 | C->T | INTERGENIC | None |