Detailed information of SNP:
|
SNP ID:
sf0724532740(Gbrowse)
Chromosome: chr07 Position: 24532740 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1392 | 82.76% | 17.24% |
| All Indica | 799 | 97.00% | 3.00% |
| All Japonica | 470 | 54.47% | 45.53% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 335 | 40.30% | 59.70% |
| Tropical Japonica | 69 | 92.75% | 7.25% |
| Japonica Intermediate | 66 | 86.36% | 13.64% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0724532740 | T->C | INTERGENIC | None |