Detailed information of SNP:
|
SNP ID:
sf0724535150(Gbrowse)
Chromosome: chr07 Position: 24535150 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1373 | 77.57% | 22.43% |
| All Indica | 797 | 98.24% | 1.76% |
| All Japonica | 458 | 55.46% | 44.54% |
| Aus | 66 | 7.58% | 92.42% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 94.81% | 5.19% |
| Indica Intermediate | 210 | 98.57% | 1.43% |
| Temperate Japonica | 320 | 65.31% | 34.69% |
| Tropical Japonica | 81 | 19.75% | 80.25% |
| Japonica Intermediate | 57 | 50.88% | 49.12% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 38 | 60.53% | 39.47% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0724535150 | T->C | LOC_Os07g41014(LOC_Os07g41014.1) | INTRON |