Detailed information of SNP:
|
SNP ID:
sf0724556241(Gbrowse)
Chromosome: chr07 Position: 24556241 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 64.48% | 35.52% |
| All Indica | 799 | 95.74% | 4.26% |
| All Japonica | 497 | 22.74% | 77.26% |
| Aus | 66 | 9.09% | 90.91% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 335 | 31.34% | 68.66% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0724556241 | G->A | INTERGENIC | None |